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CPT2 gene
Reviewed by Medicinsk Expert•Last updated: 2026-10-22•Gene

CPT2 gene

The CPT2 gene encodes an enzyme vital for converting fats into energy within the heart and muscles, and mutations in this gene cause CPT II deficiency.

Overview

The CPT2 gene provides instructions for making an enzyme called carnitine palmitoyltransferase 2. This enzyme is essential for fatty acid oxidation, a process that breaks down fats to convert them into energy. Fatty acids are a major source of energy for the heart and muscles, and for the liver during periods of fasting.

Within cells, fatty acid oxidation occurs in the mitochondria. Before entering, long-chain fatty acids must attach to a compound called carnitine. Once inside the mitochondria, carnitine palmitoyltransferase 2 removes the carnitine and adds a substance called coenzyme A. Long-chain fatty acids must be joined to coenzyme A before they can be metabolized to produce energy.

Health Conditions Related to Genetic Changes

Carnitine palmitoyltransferase II deficiency

Variants in the CPT2 gene cause carnitine palmitoyltransferase II (CPT II) deficiency, a condition that prevents the body from using certain fats for energy. This can cause serious health problems, particularly during fasting.

  • Variants that severely reduce enzyme activity cause more severe forms of the disorder (lethal neonatal form and severe infantile hepatocardiomuscular form).
  • Variants that partially reduce enzyme activity usually cause the less severe myopathic form.
  • The most common CPT2 variant replaces the amino acid serine with leucine at position 113 (Ser113Leu or S113L).
  • Symptoms include muscle pain, muscle weakness, and low blood glucose (hypoglycemia).
  • Low levels of ketones (hypoketosis) may occur because the body cannot properly break down fats.
  • Long-chain acylcarnitines may build up in cells, damaging the liver, heart, and muscles.

Other Names for This Gene

  • CPT II
  • CPT2_HUMAN
  • CPTASE

Genomic Location

The CPT2 gene is found on chromosome 1.

Frequently Asked Questions

Rapid onset of hypoglycemia (blood glucose < 50 mg/dL), low ketone bodies, lethargy or seizures, and unexplained muscle weakness or rhabdomyolysis (dark urine). If any of these appear, initiate immediate IV glucose (10% dextrose) and contact metabolic specialists; early treatment can prevent organ damage.
Yes. Both parents must carry one pathogenic CPT2 variant; each pregnancy has a 25 % chance of an affected child, a 50 % chance of a carrier, and a 25 % chance of an unaffected non‑carrier. Carrier testing for siblings and pre‑implantation genetic diagnosis are options for families who wish to reduce recurrence risk.
Order a targeted CPT2 sequencing panel (or whole‑exome if broader testing is needed) and collect a peripheral blood sample in an EDTA tube. Counsel the patient that results may reveal pathogenic, likely pathogenic, or variants of uncertain significance, and discuss the implications for family members. Ensure the lab uses a validated method and confirm any positive finding with Sanger sequencing if required.
void prolonged fasting, limit high‑fat meals, and stay well‑hydrated. Aim for a diet with moderate carbohydrates and low long‑chain fatty acids; medium‑chain triglyceride (MCT) oil can be used because it bypasses the CPT II step. Schedule regular, moderate‑intensity exercise rather than intense, prolonged workouts, and always have a quick source of glucose (e.g., fruit juice) available during activity.
Source: MedlinePlus, National Library of Medicine

MedlinePlus brings together authoritative health information from the National Library of Medicine (NLM), the National Institutes of Health (NIH), and other government agencies and health-related organizations.

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